Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16932230	1.00[CEU][hapmap]
rs1885383	0.88[ASN][1000 genomes]
rs2181032	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3181194	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs3181196	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181357	0.98[ASN][1000 genomes]
rs3181360	0.91[ASN][1000 genomes]
rs3181362	0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs3789878	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3789882	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs3827818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4978612	0.91[ASN][1000 genomes]
rs55682128	1.00[AFR][1000 genomes]
rs55732631	1.00[AFR][1000 genomes]
rs55785761	1.00[AFR][1000 genomes]
rs56006049	1.00[AFR][1000 genomes]
rs56326427	1.00[AFR][1000 genomes]
rs6478118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7868670	0.90[ASN][1000 genomes]
rs7871914	0.90[ASN][1000 genomes]
rs973351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117693200-117697200	Weak transcription	Adipose Nuclei	Adipose
2	chr9:117693600-117697200	Weak transcription	Right Atrium	heart
3	chr9:117693800-117697800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:117693800-117698800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr9:117694000-117698600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr9:117694200-117699600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:117694400-117698800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:117694400-117700200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:117695000-117698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:117695000-117700200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:117695200-117700800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:117695600-117701000	Weak transcription	Thymus	Thymus
13	chr9:117696200-117698600	Enhancers	Fetal Lung	lung

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