Variant report

Variant	rs55785761
Chromosome Location	chr9:117554101-117554102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr9:117553939-117554373	T-47D	breast:	n/a	chr9:117554237-117554246
2	GATA3	chr9:117553802-117554391	T-47D	breast:	n/a	chr9:117554237-117554246
3	NFIC	chr9:117553922-117554577	SK-N-SH	brain:	n/a	n/a
4	GATA3	chr9:117553886-117554436	MCF-7	breast:	n/a	chr9:117554237-117554246
5	TCF12	chr9:117554004-117554518	SK-N-SH	brain:	n/a	n/a
6	GATA3	chr9:117553970-117554648	SK-N-SH	brain:	n/a	chr9:117554237-117554246
7	GATA3	chr9:117553840-117554599	SK-N-SH	brain:	n/a	chr9:117554237-117554246

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117551978..117554361-chr9:117558234..117561272,3	K562	blood:

Variant related genes	Relation type
ENSG00000221734	TF binding region

rs_ID	r²[population]
rs12004944	0.92[AMR][1000 genomes]
rs16931962	1.00[AFR][1000 genomes]
rs2181032	1.00[AFR][1000 genomes]
rs3181196	1.00[AFR][1000 genomes]
rs3789878	1.00[AFR][1000 genomes]
rs3827818	1.00[AFR][1000 genomes]
rs55682128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55717217	0.97[AMR][1000 genomes]
rs55732631	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56006049	1.00[AFR][1000 genomes]
rs56326427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs973351	1.00[AFR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117542000-117561800	Weak transcription	Pancreas	Pancrea
2	chr9:117542400-117561200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:117542800-117560200	Weak transcription	A549	lung
4	chr9:117545400-117561400	Weak transcription	Gastric	stomach
5	chr9:117547800-117561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:117548000-117557000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:117548000-117565400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:117548400-117561800	Weak transcription	Esophagus	oesophagus
9	chr9:117548800-117560200	Weak transcription	Fetal Stomach	stomach
10	chr9:117549400-117560800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:117551200-117555000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:117551200-117555800	Strong transcription	Fetal Intestine Large	intestine
13	chr9:117551600-117554200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:117551600-117560400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:117551600-117560800	Weak transcription	HMEC	breast
16	chr9:117552200-117555200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr9:117552600-117554600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr9:117552800-117555800	Strong transcription	Primary B cells from cord blood	blood
19	chr9:117552800-117561200	Weak transcription	Placenta	Placenta
20	chr9:117553000-117561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:117553000-117561800	Weak transcription	Lung	lung
22	chr9:117553200-117554600	Weak transcription	Fetal Intestine Small	intestine
23	chr9:117553400-117565200	Weak transcription	HUVEC	blood vessel
24	chr9:117553600-117554800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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