Variant report

Variant	rs56006049
Chromosome Location	chr9:117579050-117579051
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1322057	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16931962	1.00[AFR][1000 genomes]
rs2181032	1.00[AFR][1000 genomes]
rs3181196	1.00[AFR][1000 genomes]
rs3789878	1.00[AFR][1000 genomes]
rs3827818	1.00[AFR][1000 genomes]
rs4979462	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55682128	1.00[AFR][1000 genomes]
rs55717217	0.81[ASN][1000 genomes]
rs55732631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55768522	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55785761	1.00[AFR][1000 genomes]
rs55951892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56211063	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56326427	1.00[AFR][1000 genomes]
rs973351	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117569800-117582600	Weak transcription	Pancreas	Pancrea
2	chr9:117574600-117586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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