Variant report

Variant	rs78688461
Chromosome Location	chr6:87781373-87781374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv5385	chr6:87781015-87803663	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87769000-87784000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:87779800-87781600	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:87779800-87781600	Enhancers	Fetal Intestine Large	intestine
4	chr6:87779800-87785200	Enhancers	Fetal Intestine Small	intestine
5	chr6:87780400-87784000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:87780600-87783600	Weak transcription	Stomach Mucosa	stomach
7	chr6:87780600-87784000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:87781000-87781600	Bivalent Enhancer	Small Intestine	intestine
9	chr6:87781000-87783800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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