Variant report

Variant	rs787060
Chromosome Location	chr10:26813313-26813314
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10764629	0.80[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10764630	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1621334	0.85[CHB][hapmap]
rs1753347	0.85[CHB][hapmap]
rs787049	0.85[CHB][hapmap]
rs787050	0.85[CHB][hapmap]
rs787067	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs787069	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:26780200-26834000	Strong transcription	Dnd41	blood
3	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:26781000-26814000	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:26792400-26813400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:26792800-26816600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:26792800-26819200	Strong transcription	Primary T cells from cord blood	blood
10	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
11	chr10:26799800-26813400	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:26801600-26813400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:26801800-26819000	Strong transcription	Thymus	Thymus
14	chr10:26802200-26822800	Weak transcription	Spleen	Spleen
15	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:26802400-26818600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:26802400-26824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:26802800-26815800	Strong transcription	GM12878-XiMat	blood
20	chr10:26804000-26817600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:26809200-26814200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:26809200-26814200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:26809200-26814400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:26809200-26817000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr10:26809200-26826600	Strong transcription	Liver	Liver
26	chr10:26809200-26831800	Weak transcription	Lung	lung
27	chr10:26809200-26834600	Strong transcription	Primary B cells from cord blood	blood
28	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:26809400-26827200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:26809400-26828200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:26810600-26814400	Weak transcription	Adipose Nuclei	Adipose
32	chr10:26811400-26813600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:26811400-26820800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:26812200-26819000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:26812400-26813400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:26812400-26813400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr10:26812400-26815000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:26812400-26819200	Strong transcription	Primary hematopoietic stem cells	blood
39	chr10:26812600-26814800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:26813000-26813400	Flanking Active TSS	Hela-S3	cervix
41	chr10:26813000-26814000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:26813000-26815200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:26813200-26813600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:26813200-26813800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:26813200-26815200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

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