Variant report

Variant	rs787069
Chromosome Location	chr10:26808361-26808362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10764629	0.87[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10764630	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1621334	0.85[CHB][hapmap]
rs1753347	0.85[CHB][hapmap]
rs7091260	0.87[CEU][hapmap]
rs787049	0.81[CHB][hapmap]
rs787050	0.85[CHB][hapmap]
rs787060	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs787067	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:26780200-26834000	Strong transcription	Dnd41	blood
3	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:26781000-26814000	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:26792400-26813400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:26792800-26816600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:26792800-26819200	Strong transcription	Primary T cells from cord blood	blood
10	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
11	chr10:26797400-26811400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:26799800-26813400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:26800000-26812400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr10:26801600-26813400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:26801800-26819000	Strong transcription	Thymus	Thymus
16	chr10:26802200-26808400	Strong transcription	Primary hematopoietic stem cells	blood
17	chr10:26802200-26808800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:26802200-26822800	Weak transcription	Spleen	Spleen
19	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:26802400-26818600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:26802400-26824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:26802800-26815800	Strong transcription	GM12878-XiMat	blood
24	chr10:26803400-26808400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:26804000-26817600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:26805200-26808600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:26806000-26808600	Weak transcription	Fetal Intestine Small	intestine
28	chr10:26806000-26808800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:26806000-26809400	Weak transcription	Right Atrium	heart
30	chr10:26806200-26808800	Strong transcription	Adipose Nuclei	Adipose
31	chr10:26806200-26809200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:26806600-26808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:26806600-26808400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:26806600-26808400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr10:26806600-26808800	Weak transcription	Lung	lung
36	chr10:26806600-26812400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:26807000-26811400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:26807200-26812600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:26807400-26809200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr10:26807400-26809200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:26807400-26809600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:26808000-26808400	Weak transcription	Liver	Liver
43	chr10:26808000-26809200	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr10:26808200-26809400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:26808200-26809400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:26808200-26810600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood

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