Variant report

Variant	rs7873288
Chromosome Location	chr9:72846795-72846796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs7021503	1.00[AMR][1000 genomes]
rs7024198	1.00[AMR][1000 genomes]
rs7027636	1.00[AMR][1000 genomes]
rs7034786	1.00[AMR][1000 genomes]
rs7042942	1.00[AMR][1000 genomes]
rs7049064	1.00[AMR][1000 genomes]
rs7855209	1.00[AMR][1000 genomes]
rs7864975	1.00[AMR][1000 genomes]
rs7872598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72828000-72858800	Weak transcription	Gastric	stomach
2	chr9:72832400-72848800	Weak transcription	Lung	lung
3	chr9:72833600-72856800	Weak transcription	Aorta	Aorta
4	chr9:72837200-72847200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:72844200-72847200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:72844200-72849200	Weak transcription	Right Ventricle	heart
7	chr9:72844400-72855400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:72845000-72847200	Weak transcription	Ovary	ovary
9	chr9:72845000-72858600	Weak transcription	Fetal Stomach	stomach
10	chr9:72845000-72859200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:72845000-72870400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:72845400-72847400	Enhancers	HSMMtube	muscle
13	chr9:72846200-72854600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:72846600-72848800	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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