Variant report

Variant	rs7873697
Chromosome Location	chr9:73420493-73420494
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1157297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes]
rs1157298	0.84[YRI][hapmap]
rs11999610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12002192	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12002234	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12003052	0.86[AMR][1000 genomes]
rs12551455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12552572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12552632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12553375	1.00[JPT][hapmap]
rs13287453	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1415232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17055861	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34155626	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34322547	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34704982	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35519173	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61256654	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6560154	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7019503	0.86[AMR][1000 genomes]
rs7020795	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7024138	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs718447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7861254	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7861859	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7863403	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7867238	0.86[AMR][1000 genomes]
rs7869404	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7871227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7872801	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7873058	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs913443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes]
rs995902	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs995903	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73407400-73421000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73407400-73421000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:73407400-73427000	Weak transcription	Aorta	Aorta
4	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:73411800-73433400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:73416600-73420800	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:73417600-73420800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:73417600-73420800	Weak transcription	Adipose Nuclei	Adipose
9	chr9:73418200-73420800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:73418200-73421000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
13	chr9:73418400-73420800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:73420000-73420800	Weak transcription	Psoas Muscle	Psoas

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