Variant report

Variant	rs61256654
Chromosome Location	chr9:73431375-73431376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1157297	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1157298	0.87[AFR][1000 genomes]
rs11999610	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12002192	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12002234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12003052	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12552572	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12552632	0.95[ASN][1000 genomes]
rs12554826	0.88[ASN][1000 genomes]
rs12555280	0.83[ASN][1000 genomes]
rs13287453	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1410372	0.86[ASN][1000 genomes]
rs1415232	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17055861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34155626	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34322547	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34704982	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35519173	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41315641	0.86[ASN][1000 genomes]
rs55660258	0.88[ASN][1000 genomes]
rs55799488	0.88[ASN][1000 genomes]
rs55905211	0.88[ASN][1000 genomes]
rs56887849	0.88[ASN][1000 genomes]
rs57091242	0.83[ASN][1000 genomes]
rs57391768	0.86[ASN][1000 genomes]
rs57760439	0.88[ASN][1000 genomes]
rs57886757	0.88[ASN][1000 genomes]
rs60455022	0.88[ASN][1000 genomes]
rs6560154	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019503	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7020795	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7022747	0.88[ASN][1000 genomes]
rs7024138	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs718447	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7861254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7861859	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7863403	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7867238	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7868854	0.88[ASN][1000 genomes]
rs7869404	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7870595	0.83[ASN][1000 genomes]
rs7871227	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7872801	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7873058	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873697	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs913443	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs995902	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995903	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73411800-73433400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
5	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
6	chr9:73429400-73438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:73429600-73440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:73430200-73432200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:73430800-73432400	Enhancers	Fetal Heart	heart
10	chr9:73430800-73437800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:73431000-73431600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:73431000-73432600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:73431200-73432400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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