Variant report

Variant	rs57391768
Chromosome Location	chr9:73443809-73443810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1157297	0.86[ASN][1000 genomes]
rs12002192	0.83[ASN][1000 genomes]
rs12002234	0.83[ASN][1000 genomes]
rs12003052	0.86[ASN][1000 genomes]
rs12552572	0.82[ASN][1000 genomes]
rs12552632	0.82[ASN][1000 genomes]
rs12553375	0.89[ASN][1000 genomes]
rs12554826	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12555280	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13287453	0.83[ASN][1000 genomes]
rs1410372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415232	0.82[ASN][1000 genomes]
rs17055861	0.83[ASN][1000 genomes]
rs34155626	0.83[ASN][1000 genomes]
rs34322547	0.80[ASN][1000 genomes]
rs34704982	0.83[ASN][1000 genomes]
rs35519173	0.83[ASN][1000 genomes]
rs41315641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55660258	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55799488	0.98[ASN][1000 genomes]
rs55905211	0.98[ASN][1000 genomes]
rs56887849	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57091242	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57760439	0.98[ASN][1000 genomes]
rs57886757	0.98[ASN][1000 genomes]
rs60455022	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61256654	0.86[ASN][1000 genomes]
rs7019503	0.86[ASN][1000 genomes]
rs7020795	0.83[ASN][1000 genomes]
rs7022747	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7024138	0.81[ASN][1000 genomes]
rs718447	0.82[ASN][1000 genomes]
rs73647171	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73647172	0.91[ASN][1000 genomes]
rs7861254	0.83[ASN][1000 genomes]
rs7861859	0.83[ASN][1000 genomes]
rs7863403	0.83[ASN][1000 genomes]
rs7867238	0.86[ASN][1000 genomes]
rs7868854	0.98[ASN][1000 genomes]
rs7869404	0.83[ASN][1000 genomes]
rs7870595	0.92[ASN][1000 genomes]
rs7871227	0.86[ASN][1000 genomes]
rs7872801	0.83[ASN][1000 genomes]
rs7873058	0.83[ASN][1000 genomes]
rs913443	0.86[ASN][1000 genomes]
rs995902	0.83[ASN][1000 genomes]
rs995903	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13599	chr9:73442098-73444722	Enhancers Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv14710	chr9:73443111-73444722	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
3	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
4	chr9:73437400-73447200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:73438200-73444800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:73438600-73444800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:73438600-73449000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73438600-73456800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:73439000-73445000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:73440400-73447200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:73442200-73459800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:73442800-73444200	Weak transcription	Brain Substantia Nigra	brain
13	chr9:73443000-73444000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:73443000-73444600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:73443000-73453400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:73443200-73444400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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