Variant report

Variant	rs12554826
Chromosome Location	chr9:73434165-73434166
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73431959..73434584-chr9:73436749..73439666,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1157297	0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11999610	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs12002192	0.85[ASN][1000 genomes]
rs12002234	0.85[ASN][1000 genomes]
rs12003052	0.88[ASN][1000 genomes]
rs12551455	1.00[JPT][hapmap]
rs12552572	0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12552632	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12553375	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12555280	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13287453	0.85[ASN][1000 genomes]
rs1410372	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1415232	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17055861	0.85[ASN][1000 genomes]
rs34155626	0.85[ASN][1000 genomes]
rs34322547	0.82[ASN][1000 genomes]
rs34704982	0.85[ASN][1000 genomes]
rs35519173	0.85[ASN][1000 genomes]
rs41315641	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55660258	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55799488	1.00[ASN][1000 genomes]
rs55905211	1.00[ASN][1000 genomes]
rs56887849	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57091242	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57391768	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57760439	1.00[ASN][1000 genomes]
rs57886757	1.00[ASN][1000 genomes]
rs60455022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61256654	0.88[ASN][1000 genomes]
rs6560154	0.81[ASN][1000 genomes]
rs7019503	0.88[ASN][1000 genomes]
rs7020795	0.85[ASN][1000 genomes]
rs7022747	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024138	0.83[ASN][1000 genomes]
rs718447	0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs73647171	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73647172	0.89[ASN][1000 genomes]
rs7861254	0.85[ASN][1000 genomes]
rs7861859	0.85[ASN][1000 genomes]
rs7863403	0.85[ASN][1000 genomes]
rs7867238	0.88[ASN][1000 genomes]
rs7868854	1.00[ASN][1000 genomes]
rs7869404	0.85[ASN][1000 genomes]
rs7870595	0.94[ASN][1000 genomes]
rs7871227	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7872801	0.85[ASN][1000 genomes]
rs7873058	0.85[ASN][1000 genomes]
rs913443	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs995902	0.85[ASN][1000 genomes]
rs995903	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12554826	CCDC73	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
4	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
5	chr9:73429400-73438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:73429600-73440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:73430800-73437800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:73432200-73438400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:73432200-73438400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:73432400-73436600	Weak transcription	Fetal Heart	heart
11	chr9:73433200-73434200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:73433400-73434200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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