Variant report

Variant	rs7874646
Chromosome Location	chr9:13899209-13899210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13896594..13899401-chr9:13941918..13943557,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10810057	1.00[CHB][hapmap]
rs10961295	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16931077	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1831087	0.86[ASN][1000 genomes]
rs1923352	0.80[AFR][1000 genomes]
rs56183905	0.86[ASN][1000 genomes]
rs7021547	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7029310	0.86[ASN][1000 genomes]
rs7029494	1.00[CHB][hapmap]
rs7029520	0.86[ASN][1000 genomes]
rs7034760	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13880600-13899800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13897600-13899400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:13897600-13900000	Enhancers	Fetal Heart	heart
4	chr9:13897800-13899400	Weak transcription	Adipose Nuclei	Adipose
5	chr9:13897800-13899800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:13897800-13899800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:13897800-13900000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:13897800-13900000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:13897800-13900000	Weak transcription	Aorta	Aorta
10	chr9:13897800-13901600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:13898000-13900400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:13898400-13902600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:13898600-13899400	Enhancers	HUVEC	blood vessel
14	chr9:13898600-13900600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr9:13898600-13900800	Enhancers	Fetal Muscle Leg	muscle
16	chr9:13898600-13900800	Enhancers	Fetal Stomach	stomach
17	chr9:13898600-13901400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:13898600-13901600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:13898800-13900800	Enhancers	Fetal Lung	lung
20	chr9:13898800-13901600	Enhancers	HMEC	breast
21	chr9:13898800-13901800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:13898800-13901800	Enhancers	NHEK	skin
23	chr9:13899000-13899800	Weak transcription	Fetal Kidney	kidney
24	chr9:13899000-13900000	Weak transcription	Left Ventricle	heart
25	chr9:13899000-13901200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:13899000-13901400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:13899200-13900000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr9:13899200-13900000	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links