Variant report

Variant	rs7029520
Chromosome Location	chr9:13900398-13900399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10961295	0.86[ASN][1000 genomes]
rs11998762	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1327512	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1373252	1.00[CHB][hapmap]
rs1410025	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1576066	0.90[EUR][1000 genomes]
rs16931061	1.00[CHB][hapmap]
rs16931089	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16931106	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1831087	1.00[ASN][1000 genomes]
rs1854162	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55646577	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56183905	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59082877	0.90[EUR][1000 genomes]
rs59428259	0.90[EUR][1000 genomes]
rs66944108	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67946774	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7029310	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871066	0.89[EUR][1000 genomes]
rs7874646	0.86[ASN][1000 genomes]
rs953747	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13897800-13901600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:13898000-13900400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:13898400-13902600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:13898600-13900600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:13898600-13900800	Enhancers	Fetal Muscle Leg	muscle
6	chr9:13898600-13900800	Enhancers	Fetal Stomach	stomach
7	chr9:13898600-13901400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:13898600-13901600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:13898800-13900800	Enhancers	Fetal Lung	lung
10	chr9:13898800-13901600	Enhancers	HMEC	breast
11	chr9:13898800-13901800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:13898800-13901800	Enhancers	NHEK	skin
13	chr9:13899000-13901200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:13899000-13901400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:13899400-13901400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:13899400-13901600	Enhancers	Adipose Nuclei	Adipose
17	chr9:13899800-13900400	Enhancers	HUVEC	blood vessel
18	chr9:13899800-13900600	Enhancers	Fetal Kidney	kidney
19	chr9:13899800-13901400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr9:13899800-13901400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:13899800-13901800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:13900000-13900400	Enhancers	Placenta	Placenta
23	chr9:13900000-13900600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr9:13900000-13900600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr9:13900000-13900800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr9:13900000-13900800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:13900000-13900800	Enhancers	Aorta	Aorta
28	chr9:13900000-13900800	Weak transcription	Fetal Heart	heart
29	chr9:13900000-13901200	Enhancers	Left Ventricle	heart
30	chr9:13900000-13901800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr9:13900000-13901800	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr9:13900200-13902000	Enhancers	Psoas Muscle	Psoas

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