Variant report

Variant	rs16931089
Chromosome Location	chr9:13896745-13896746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13896594..13899401-chr9:13941918..13943557,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11998762	0.84[AMR][1000 genomes]
rs12004475	1.00[ASN][1000 genomes]
rs12004949	1.00[ASN][1000 genomes]
rs1327512	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373252	1.00[CHB][hapmap]
rs1410025	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576066	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931054	1.00[ASN][1000 genomes]
rs16931057	1.00[ASN][1000 genomes]
rs16931061	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16931106	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1854162	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55646577	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55772107	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56183905	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58444683	1.00[ASN][1000 genomes]
rs59082877	0.97[EUR][1000 genomes]
rs59428259	0.97[EUR][1000 genomes]
rs61441143	1.00[ASN][1000 genomes]
rs61695591	1.00[ASN][1000 genomes]
rs66944108	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67685423	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67946774	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029310	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7029520	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73415097	1.00[ASN][1000 genomes]
rs7468217	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871066	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953747	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13880600-13899800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13892000-13898600	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:13895200-13897800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:13895400-13896800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13895400-13899000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:13895600-13897800	Enhancers	NHEK	skin
7	chr9:13895800-13896800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:13895800-13896800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:13895800-13897000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:13895800-13897400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:13895800-13897600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:13895800-13898200	Enhancers	HUVEC	blood vessel
13	chr9:13896400-13897800	Enhancers	Adipose Nuclei	Adipose

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