Variant report
| Variant | rs67685423 |
|---|---|
| Chromosome Location | chr9:13912922-13912923 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11998762 | 0.80[EUR][1000 genomes] |
| rs12004475 | 1.00[ASN][1000 genomes] |
| rs12004949 | 1.00[ASN][1000 genomes] |
| rs1327512 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1410025 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1576066 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16931054 | 1.00[ASN][1000 genomes] |
| rs16931057 | 1.00[ASN][1000 genomes] |
| rs16931061 | 1.00[ASN][1000 genomes] |
| rs16931089 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16931106 | 0.87[EUR][1000 genomes] |
| rs1854162 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55646577 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55772107 | 1.00[ASN][1000 genomes] |
| rs58444683 | 1.00[ASN][1000 genomes] |
| rs59082877 | 0.81[EUR][1000 genomes] |
| rs59428259 | 0.81[EUR][1000 genomes] |
| rs61441143 | 1.00[ASN][1000 genomes] |
| rs61695591 | 1.00[ASN][1000 genomes] |
| rs66944108 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs67946774 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72714001 | 0.88[AMR][1000 genomes] |
| rs73415097 | 1.00[ASN][1000 genomes] |
| rs7468217 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7871066 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs953747 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032113 | chr9:13861066-13923136 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1032447 | chr9:13861066-13923673 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv613635 | chr9:13893246-13961462 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13902000-13914200 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr9:13912000-13913600 | Weak transcription | Fetal Heart | heart |
| 3 | chr9:13912600-13919200 | Weak transcription | Right Atrium | heart |
