Variant report
Variant | rs1410025 |
---|---|
Chromosome Location | chr9:13892400-13892401 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12004475 | 1.00[ASN][1000 genomes] |
rs12004949 | 1.00[ASN][1000 genomes] |
rs1327512 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1373252 | 1.00[CHB][hapmap] |
rs1576066 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16931054 | 1.00[ASN][1000 genomes] |
rs16931057 | 1.00[ASN][1000 genomes] |
rs16931061 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs16931089 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1831087 | 0.91[AFR][1000 genomes] |
rs1854162 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55646577 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55772107 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58444683 | 1.00[ASN][1000 genomes] |
rs59082877 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59428259 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61441143 | 1.00[ASN][1000 genomes] |
rs61695591 | 1.00[ASN][1000 genomes] |
rs66944108 | 0.85[EUR][1000 genomes] |
rs67685423 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67946774 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7029310 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7029520 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73415097 | 1.00[ASN][1000 genomes] |
rs7468217 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7871066 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs953747 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1032113 | chr9:13861066-13923136 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1032447 | chr9:13861066-13923673 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:13880600-13899800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr9:13892000-13898600 | Weak transcription | Fetal Muscle Leg | muscle |