Variant report

Variant	rs7875069
Chromosome Location	chr9:94672175-94672176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94666595..94672238-chr9:94672403..94678372,8	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1954599	0.83[ASN][1000 genomes]
rs2049704	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2049705	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3858082	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59394638	0.81[ASN][1000 genomes]
rs60066947	0.81[ASN][1000 genomes]
rs6479381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479382	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032998	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7033261	0.83[ASN][1000 genomes]
rs7038822	0.83[ASN][1000 genomes]
rs7046846	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7048052	0.92[ASN][1000 genomes]
rs73519162	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73519164	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73519170	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73519172	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73519174	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73519181	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7851545	0.83[ASN][1000 genomes]
rs7854552	0.81[ASN][1000 genomes]
rs7854566	0.81[ASN][1000 genomes]
rs7854742	0.81[ASN][1000 genomes]
rs7857164	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857924	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7866188	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7872177	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873326	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875147	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94667800-94672200	Weak transcription	Small Intestine	intestine
2	chr9:94668800-94673000	Weak transcription	Esophagus	oesophagus
3	chr9:94668800-94676800	Weak transcription	Fetal Intestine Large	intestine
4	chr9:94668800-94676800	Weak transcription	Spleen	Spleen
5	chr9:94668800-94682800	Weak transcription	Colonic Mucosa	Colon
6	chr9:94669000-94674400	Enhancers	Colon Smooth Muscle	Colon
7	chr9:94669200-94676600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:94670200-94678000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:94670200-94678400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:94670200-94682800	Weak transcription	Fetal Kidney	kidney
11	chr9:94670400-94681200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:94670400-94682800	Weak transcription	Right Atrium	heart
13	chr9:94670600-94676400	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:94670600-94686200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:94670800-94676400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:94671600-94673400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:94671600-94673400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:94671600-94676800	Weak transcription	Fetal Intestine Small	intestine
19	chr9:94671600-94676800	Weak transcription	Fetal Stomach	stomach
20	chr9:94671600-94682600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:94671800-94672400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:94671800-94674000	Weak transcription	K562	blood
23	chr9:94671800-94676400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:94671800-94677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:94671800-94678200	Weak transcription	Fetal Lung	lung
26	chr9:94671800-94678200	Weak transcription	Ovary	ovary
27	chr9:94672000-94673400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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