Variant report

Variant	rs7875147
Chromosome Location	chr9:94687508-94687509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94676427..94678807-chr9:94685179..94687567,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1573979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16908129	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16908147	1.00[AFR][1000 genomes]
rs1954599	0.86[ASN][1000 genomes]
rs2049704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2049705	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186091	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2297569	0.81[AMR][1000 genomes]
rs3858082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743851	1.00[AFR][1000 genomes]
rs59394638	0.83[ASN][1000 genomes]
rs60066947	0.83[ASN][1000 genomes]
rs6479381	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479382	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7032998	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7033261	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7038822	0.86[ASN][1000 genomes]
rs7046846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73519162	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73519164	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73519170	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73519172	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73519174	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73519181	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7851545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7854552	0.83[ASN][1000 genomes]
rs7854566	0.83[ASN][1000 genomes]
rs7854742	0.83[ASN][1000 genomes]
rs7857164	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7857924	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872177	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873326	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7875069	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7876056	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9696921	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94681400-94691400	Weak transcription	Pancreas	Pancrea
2	chr9:94683600-94691800	Weak transcription	Fetal Lung	lung
3	chr9:94683600-94692000	Weak transcription	K562	blood
4	chr9:94685400-94690400	Weak transcription	Fetal Intestine Small	intestine
5	chr9:94686400-94689200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:94686400-94692400	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:94686600-94687600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:94686600-94687600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:94686600-94687600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:94686600-94687600	Weak transcription	Gastric	stomach
11	chr9:94686600-94690400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:94686600-94690600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:94686600-94690800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:94686600-94696000	Weak transcription	Ovary	ovary
15	chr9:94686800-94688400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:94686800-94690200	Weak transcription	Fetal Stomach	stomach
17	chr9:94687400-94688200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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