Variant report

Variant	rs787928
Chromosome Location	chr11:85799763-85799764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1941375	0.85[ASN][1000 genomes]
rs490507	0.88[ASN][1000 genomes]
rs495942	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs568755	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs583463	0.91[ASN][1000 genomes]
rs590055	0.88[ASN][1000 genomes]
rs621942	0.84[ASN][1000 genomes]
rs622876	0.91[ASN][1000 genomes]
rs631249	0.85[EUR][1000 genomes]
rs636848	0.91[ASN][1000 genomes]
rs664596	0.82[ASN][1000 genomes]
rs67008419	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs693458	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85791600-85801200	Weak transcription	Pancreas	Pancrea
2	chr11:85796200-85801200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85798400-85803800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:85798600-85800000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:85798600-85800200	Weak transcription	NH-A	brain
6	chr11:85798800-85802600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:85798800-85802600	Weak transcription	HSMMtube	muscle
8	chr11:85799000-85800800	Weak transcription	HSMM	muscle
9	chr11:85799600-85800400	Enhancers	Liver	Liver
10	chr11:85799600-85802800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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