Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:85812308..85815576-chr11:85816844..85820250,5	K562	blood:
2	chr11:85538884..85541590-chr11:85810993..85813631,2	MCF-7	breast:
3	chr11:85810855..85813680-chr11:85847452..85850001,2	K562	blood:
4	chr11:85778602..85782954-chr11:85809019..85814326,4	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12786057	0.82[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs2374702	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34191396	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34565850	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs521711	0.80[ASN][1000 genomes]
rs532470	0.81[LWK][hapmap]
rs568755	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61905902	0.80[EUR][1000 genomes]
rs631249	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67008419	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs787928	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7926591	0.87[ASW][hapmap];0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs805454	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85811200-85812600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:85811200-85812600	Weak transcription	NHLF	lung
3	chr11:85811400-85813000	Weak transcription	HepG2	liver
4	chr11:85811400-85814800	Weak transcription	K562	blood
5	chr11:85812000-85812600	Enhancers	A549	lung
6	chr11:85812000-85813200	Enhancers	Hela-S3	cervix
7	chr11:85812000-85813400	Enhancers	NH-A	brain
8	chr11:85812000-85813800	Enhancers	Osteobl	bone
9	chr11:85812200-85813000	Enhancers	Liver	Liver
10	chr11:85812200-85813800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:85812400-85812600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:85812400-85813000	Enhancers	NHEK	skin
13	chr11:85812400-85813200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:85812400-85813400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:85812400-85813400	Enhancers	HMEC	breast
16	chr11:85812400-85813400	Enhancers	HSMM	muscle
17	chr11:85812400-85813600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:85812400-85813600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:85812400-85813600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:85812400-85813600	Enhancers	NHDF-Ad	bronchial
21	chr11:85812400-85813800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search: