Variant report

Variant	rs7926591
Chromosome Location	chr11:85840446-85840447
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12786057	0.91[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374702	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34191396	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34565850	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs495942	0.87[ASW][hapmap];0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs568755	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61904266	0.83[ASN][1000 genomes]
rs61905902	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs631249	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7117280	0.80[AMR][1000 genomes]
rs7926460	0.81[AMR][1000 genomes]
rs805454	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85835800-85845600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:85838200-85846800	Weak transcription	Placenta	Placenta
3	chr11:85838600-85843800	Weak transcription	HepG2	liver
4	chr11:85838800-85845000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:85839000-85845600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:85839600-85841000	Enhancers	Fetal Intestine Small	intestine
7	chr11:85839600-85841400	Enhancers	K562	blood
8	chr11:85840000-85840800	Enhancers	Small Intestine	intestine
9	chr11:85840000-85845600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:85840000-85847200	Weak transcription	Ovary	ovary
11	chr11:85840400-85840800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:85840400-85841000	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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