Variant report

Variant	rs7879645
Chromosome Location	chrX:109444139-109444140
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:109442417..109445088-chrX:109447591..109449107,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6567848	1.00[YRI][hapmap]
rs7879171	1.00[YRI][hapmap]
rs7890338	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	nsv518116	chrX:109424029-109630707	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109416200-109460400	Weak transcription	Primary B cells from cord blood	blood
2	chrX:109418800-109453200	Weak transcription	Hela-S3	cervix
3	chrX:109420000-109449400	Weak transcription	Fetal Intestine Large	intestine
4	chrX:109422600-109444400	Weak transcription	Duodenum Mucosa	Duodenum
5	chrX:109423600-109444600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chrX:109424400-109453000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chrX:109426200-109447200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chrX:109426200-109448400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chrX:109426200-109448400	Weak transcription	NHEK	skin
10	chrX:109426400-109452000	Weak transcription	Left Ventricle	heart
11	chrX:109426400-109452600	Weak transcription	NHLF	lung
12	chrX:109426600-109459000	Weak transcription	Fetal Intestine Small	intestine
13	chrX:109430200-109445200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chrX:109430200-109452800	Weak transcription	A549	lung
15	chrX:109432000-109448400	Weak transcription	HSMMtube	muscle
16	chrX:109432400-109451000	Weak transcription	Fetal Thymus	thymus
17	chrX:109432600-109448000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chrX:109432600-109448200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chrX:109432600-109463200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chrX:109433000-109460600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chrX:109433000-109464600	Weak transcription	GM12878-XiMat	blood
22	chrX:109433200-109447800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chrX:109433200-109460600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chrX:109436200-109445800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chrX:109436600-109445200	Weak transcription	HMEC	breast
26	chrX:109436600-109447000	Weak transcription	Fetal Muscle Trunk	muscle
27	chrX:109436800-109446000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chrX:109437000-109463000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chrX:109437600-109448000	Weak transcription	NH-A	brain
30	chrX:109438000-109459400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chrX:109438200-109446000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chrX:109439200-109445400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chrX:109439600-109453800	Weak transcription	HSMM	muscle
34	chrX:109439800-109446000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chrX:109439800-109453200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chrX:109440200-109444400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chrX:109440400-109444400	Strong transcription	K562	blood
38	chrX:109440400-109452800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chrX:109441000-109444200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chrX:109441400-109445600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chrX:109441400-109445600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chrX:109441600-109444400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chrX:109442000-109444200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chrX:109442000-109445000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chrX:109442000-109459800	Weak transcription	Primary hematopoietic stem cells	blood
46	chrX:109442200-109444800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chrX:109442200-109446800	Weak transcription	Liver	Liver
48	chrX:109442200-109449800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chrX:109442600-109447600	Weak transcription	Dnd41	blood
50	chrX:109442600-109453000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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