Variant report

Variant	rs7890338
Chromosome Location	chrX:109455799-109455800
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:109455711..109458458-chrX:109471563..109474209,3	K562	blood:
2	chrX:109447932..109450402-chrX:109453360..109455879,3	K562	blood:
3	chrX:109447340..109450402-chrX:109451576..109456308,5	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6567848	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs7879171	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs7879645	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	nsv518116	chrX:109424029-109630707	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109416200-109460400	Weak transcription	Primary B cells from cord blood	blood
2	chrX:109426600-109459000	Weak transcription	Fetal Intestine Small	intestine
3	chrX:109432600-109463200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chrX:109433000-109460600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chrX:109433000-109464600	Weak transcription	GM12878-XiMat	blood
6	chrX:109433200-109460600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chrX:109437000-109463000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chrX:109438000-109459400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chrX:109442000-109459800	Weak transcription	Primary hematopoietic stem cells	blood
10	chrX:109444600-109461000	Weak transcription	Primary B cells from peripheral blood	blood
11	chrX:109445400-109468600	Weak transcription	K562	blood
12	chrX:109445400-109472800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chrX:109445600-109472600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chrX:109446000-109457400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chrX:109454200-109471800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chrX:109454400-109456000	Enhancers	NHEK	skin
17	chrX:109454400-109456800	Enhancers	A549	lung
18	chrX:109454400-109459800	Weak transcription	HUVEC	blood vessel
19	chrX:109454400-109460400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chrX:109454400-109463000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chrX:109454400-109463000	Weak transcription	HSMM	muscle
22	chrX:109454800-109462200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chrX:109455400-109458000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chrX:109455400-109472200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chrX:109455600-109456400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chrX:109455600-109460200	Weak transcription	Hela-S3	cervix
27	chrX:109455600-109460600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chrX:109455600-109462400	Weak transcription	HMEC	breast

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