Variant report

Variant	rs78845704
Chromosome Location	chr9:100849682-100849683
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100849256..100851636-chr9:100854662..100858526,4	MCF-7	breast:
2	chr9:100838071..100839825-chr9:100848704..100850871,2	K562	blood:
3	chr9:100841190..100843013-chr9:100847159..100849959,2	K562	blood:
4	chr9:100843269..100846185-chr9:100848032..100850204,2	K562	blood:

Variant related genes	Relation type
ENSG00000106785	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	esv3341074	chr9:100848756-100851304	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3440157	chr9:100849156-100851704	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
2	chr9:100838200-100852800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:100838600-100852000	Strong transcription	GM12878-XiMat	blood
4	chr9:100839000-100849800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr9:100839400-100850400	Strong transcription	Dnd41	blood
6	chr9:100839400-100861800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:100839600-100850600	Strong transcription	Thymus	Thymus
8	chr9:100842400-100849800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:100842800-100850200	Weak transcription	Fetal Heart	heart
10	chr9:100843800-100849800	Weak transcription	Ovary	ovary
11	chr9:100843800-100849800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:100844000-100849800	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:100844000-100850000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:100844800-100850000	Weak transcription	Brain Substantia Nigra	brain
15	chr9:100845000-100849800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:100845000-100850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:100845000-100850600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:100845200-100850000	Weak transcription	NHDF-Ad	bronchial
19	chr9:100845200-100853000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr9:100845200-100856200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr9:100845200-100856600	Weak transcription	Small Intestine	intestine
22	chr9:100845400-100849800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr9:100845800-100850000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr9:100845800-100850000	Strong transcription	Lung	lung
25	chr9:100845800-100853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:100846000-100849800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:100846000-100849800	Weak transcription	Right Ventricle	heart
28	chr9:100846000-100849800	Weak transcription	NH-A	brain
29	chr9:100846000-100850000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:100846000-100850000	Weak transcription	HSMM	muscle
31	chr9:100846000-100850200	Weak transcription	Fetal Lung	lung
32	chr9:100846000-100862600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr9:100846200-100849800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:100846200-100850000	Strong transcription	Liver	Liver
35	chr9:100846200-100850000	Weak transcription	Brain Hippocampus Middle	brain
36	chr9:100846200-100862200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr9:100846400-100849800	Strong transcription	Colonic Mucosa	Colon
38	chr9:100846400-100849800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr9:100846400-100854200	Weak transcription	HSMMtube	muscle
40	chr9:100846400-100856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:100846400-100861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:100846800-100850000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr9:100847000-100849800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:100847400-100849800	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr9:100847400-100849800	Weak transcription	Brain Anterior Caudate	brain
46	chr9:100847400-100859400	Weak transcription	HepG2	liver
47	chr9:100847400-100869400	Weak transcription	A549	lung
48	chr9:100847600-100849800	Weak transcription	NHLF	lung
49	chr9:100847600-100850000	Weak transcription	Left Ventricle	heart
50	chr9:100847600-100850200	Weak transcription	Brain Angular Gyrus	brain

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