Variant report

Variant	rs78901308
Chromosome Location	chr3:119684444-119684445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	esv2631534	chr3:119683848-119685428	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119630800-119697400	Weak transcription	Thymus	Thymus
2	chr3:119631000-119717000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:119641000-119694400	Weak transcription	Fetal Lung	lung
4	chr3:119656400-119700000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:119656600-119718400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:119658400-119688400	Weak transcription	NHEK	skin
7	chr3:119658400-119688600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:119662000-119684800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:119662400-119700400	Weak transcription	Fetal Intestine Large	intestine
10	chr3:119664000-119695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:119664600-119700200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:119664600-119702400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr3:119665800-119697400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:119665800-119716800	Weak transcription	HSMM	muscle
15	chr3:119666000-119703000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:119666200-119687600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:119666200-119688200	Weak transcription	HMEC	breast
18	chr3:119666200-119700200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:119666200-119700400	Weak transcription	Fetal Thymus	thymus
20	chr3:119666400-119688400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:119667200-119688600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:119667800-119688000	Weak transcription	Pancreas	Pancrea
23	chr3:119670800-119687400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:119674400-119688400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:119675200-119688400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:119675600-119697400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:119678000-119697400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:119678600-119688600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:119679200-119696600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:119680200-119688600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:119681200-119723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:119681800-119688400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:119681800-119693600	Weak transcription	Left Ventricle	heart
34	chr3:119681800-119700400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:119681800-119700800	Weak transcription	Ovary	ovary
36	chr3:119682000-119685200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:119682000-119691200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:119682000-119692200	Weak transcription	Primary T cells from cord blood	blood
39	chr3:119682000-119697400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:119682000-119697400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:119682000-119697600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr3:119682000-119698000	Weak transcription	Dnd41	blood
43	chr3:119682000-119700400	Weak transcription	Primary B cells from cord blood	blood
44	chr3:119682400-119700200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr3:119682600-119691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:119683200-119689800	Weak transcription	A549	lung
47	chr3:119683600-119701800	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links