Variant report

Variant	rs7893874
Chromosome Location	chr10:27310045-27310046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11015450	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015452	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015472	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015484	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11015486	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11015505	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs11015593	0.83[LWK][hapmap];0.83[MKK][hapmap]
rs11015594	0.84[LWK][hapmap];0.83[MKK][hapmap]
rs11498427	0.89[AFR][1000 genomes]
rs12242038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252613	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261555	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12264338	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16927532	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16927545	0.90[LWK][hapmap];0.91[MKK][hapmap]
rs16927590	0.90[LWK][hapmap];0.91[MKK][hapmap]
rs2368205	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3904096	0.88[LWK][hapmap];0.91[MKK][hapmap]
rs7908869	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910008	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916592	0.81[AFR][1000 genomes]
rs7917398	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7893874	MASTL	cis	lymphoblastoid	seeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
3	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
10	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
13	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:27288800-27357000	Weak transcription	Gastric	stomach
17	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
19	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
20	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
22	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
24	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
25	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
26	chr10:27290800-27326800	Weak transcription	Osteobl	bone
27	chr10:27291000-27310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:27291000-27312200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:27291200-27316600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
32	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:27291400-27360600	Weak transcription	Lung	lung
34	chr10:27291600-27312600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:27291600-27314600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:27291600-27316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
38	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:27291600-27351000	Weak transcription	NHLF	lung
41	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
42	chr10:27291800-27325600	Weak transcription	Primary B cells from cord blood	blood
43	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
44	chr10:27292200-27311000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:27292600-27312200	Weak transcription	Brain Anterior Caudate	brain
47	chr10:27292800-27315800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:27293000-27312400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:27293600-27340200	Weak transcription	A549	lung
50	chr10:27293800-27311000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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