Variant report

Variant	rs11498427
Chromosome Location	chr10:27270410-27270411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD26-1	chr10:27268231-27270936	NONHSAT011877

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11015450	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs11015452	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs11015458	0.89[AFR][1000 genomes]
rs11015472	0.83[AFR][1000 genomes]
rs11015484	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs11015486	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs12242038	0.89[AFR][1000 genomes]
rs12251173	0.84[AMR][1000 genomes]
rs12252613	0.82[AFR][1000 genomes]
rs12261555	0.88[AFR][1000 genomes]
rs12264338	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs16927532	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs2368205	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs7082691	0.84[AMR][1000 genomes]
rs7893874	1.00[ASW][hapmap];0.90[LWK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs7894246	1.00[CEU][hapmap]
rs7906570	0.84[AMR][1000 genomes]
rs7908869	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs7910008	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs7917398	1.00[ASW][hapmap];0.90[LWK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
3	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
4	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
5	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
6	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:27254000-27271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:27255600-27282600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
12	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:27258600-27272800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:27264000-27271200	Weak transcription	Aorta	Aorta
15	chr10:27268600-27271200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:27269000-27273200	Strong transcription	Primary T cells from cord blood	blood
17	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:27269600-27271800	Weak transcription	Lung	lung
19	chr10:27270200-27270600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:27270200-27272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose

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