Variant report

Variant	rs7896069
Chromosome Location	chr10:21552094-21552095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs7091304	0.88[CEU][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7099095	0.88[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7100597	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7100759	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7898946	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7903792	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7917826	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs7919417	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21547400-21554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:21548600-21552200	Weak transcription	K562	blood
3	chr10:21549200-21552200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:21549200-21552400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:21549400-21552400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:21550200-21559800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:21550200-21560200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:21550400-21554200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:21550400-21556400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:21550400-21559800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:21550400-21560200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:21551200-21552400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:21551200-21564000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:21551400-21552400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:21551600-21553600	Enhancers	Fetal Lung	lung
16	chr10:21551800-21552200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:21551800-21555200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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