Variant report

Variant	rs7917826
Chromosome Location	chr10:21550266-21550267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21549133..21551540-chr10:21553150..21555361,2	MCF-7	breast:
2	chr10:21549541..21551561-chr10:21551946..21554447,2	K562	blood:
3	chr10:21461521..21464243-chr10:21547978..21550972,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078114	Chromatin interaction
ENSG00000231920	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs7091304	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7099095	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7100597	0.88[ASN][1000 genomes]
rs7100759	0.88[ASN][1000 genomes]
rs7896069	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs7898946	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7903792	0.88[ASN][1000 genomes]
rs7919417	1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21543200-21550800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:21547400-21554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:21548400-21550600	Enhancers	Ovary	ovary
4	chr10:21548400-21551200	Enhancers	Fetal Lung	lung
5	chr10:21548600-21552200	Weak transcription	K562	blood
6	chr10:21549000-21550400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:21549200-21552200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:21549200-21552400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:21549400-21550400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:21549400-21550400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:21549400-21550600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:21549400-21550600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:21549400-21552400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:21549600-21550400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:21549600-21550600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:21549800-21550400	Weak transcription	Fetal Brain Female	brain
17	chr10:21549800-21550800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:21549800-21551800	Enhancers	Brain Germinal Matrix	brain
19	chr10:21550200-21550400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:21550200-21550400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:21550200-21551400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:21550200-21559800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:21550200-21560200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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