Variant report

Variant	rs7896759
Chromosome Location	chr10:6322393-6322394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6319975..6324028-chr10:6337597..6341506,5	MCF-7	breast:
2	chr10:6319800..6323554-chr10:6441503..6444162,3	MCF-7	breast:
3	chr10:6320265..6323199-chr10:6333392..6336279,3	MCF-7	breast:
4	chr10:6320988..6323226-chr10:6428570..6430492,2	MCF-7	breast:
5	chr10:6243668..6247308-chr10:6319585..6323356,5	MCF-7	breast:
6	chr10:6288204..6291349-chr10:6321853..6323646,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12243955	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55778376	1.00[EUR][1000 genomes]
rs55824986	1.00[EUR][1000 genomes]
rs56213789	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59586022	1.00[EUR][1000 genomes]
rs7896447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902051	1.00[EUR][1000 genomes]
rs7904795	1.00[EUR][1000 genomes]
rs7910911	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6317800-6332600	Weak transcription	Thymus	Thymus
2	chr10:6318000-6337600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:6318200-6323400	Weak transcription	Brain Substantia Nigra	brain
4	chr10:6318200-6333000	Weak transcription	Primary T cells from cord blood	blood
5	chr10:6318200-6333200	Weak transcription	Adipose Nuclei	Adipose
6	chr10:6318200-6337800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:6320200-6322400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:6320600-6322400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:6320600-6322600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:6320600-6322600	Enhancers	Fetal Intestine Large	intestine
11	chr10:6320600-6322800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:6320600-6322800	Enhancers	Fetal Intestine Small	intestine
13	chr10:6320600-6322800	Enhancers	HepG2	liver
14	chr10:6320800-6322400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:6320800-6322400	Enhancers	Hela-S3	cervix
16	chr10:6320800-6322600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr10:6320800-6322600	Enhancers	Stomach Mucosa	stomach
18	chr10:6320800-6322800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:6320800-6322800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:6320800-6322800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:6320800-6322800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:6321000-6322400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:6321000-6322400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:6321000-6322600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:6321000-6322800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:6321200-6322400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:6321200-6322600	Enhancers	NHLF	lung
28	chr10:6321400-6322400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:6321400-6322600	Enhancers	H9 Cell Line	embryonic stem cell
30	chr10:6321400-6322600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:6321400-6322600	Enhancers	Fetal Kidney	kidney
32	chr10:6321400-6322600	Enhancers	HSMM	muscle
33	chr10:6321400-6322800	Enhancers	Pancreas	Pancrea
34	chr10:6321600-6322400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr10:6321600-6322600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:6321800-6322400	Enhancers	Duodenum Mucosa	Duodenum
37	chr10:6321800-6322400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr10:6321800-6322600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:6321800-6322600	Enhancers	Brain Cingulate Gyrus	brain
40	chr10:6321800-6322600	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr10:6321800-6322800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:6321800-6322800	Flanking Active TSS	A549	lung
43	chr10:6321800-6323000	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr10:6322000-6322400	Enhancers	Brain Anterior Caudate	brain
45	chr10:6322000-6322600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr10:6322000-6322600	Enhancers	Liver	Liver
47	chr10:6322000-6322600	Enhancers	Brain Hippocampus Middle	brain
48	chr10:6322000-6322800	Enhancers	Primary T cells fromperipheralblood	blood
49	chr10:6322000-6323000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:6322200-6322400	Enhancers	Primary T helper cells PMA-I stimulated	--

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