Variant report

Variant	rs7902051
Chromosome Location	chr10:6383771-6383772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12243955	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17152226	1.00[MEX][hapmap]
rs55778376	1.00[EUR][1000 genomes]
rs55824986	1.00[EUR][1000 genomes]
rs56213789	1.00[EUR][1000 genomes]
rs59586022	1.00[EUR][1000 genomes]
rs7077335	1.00[TSI][hapmap]
rs7896447	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7896759	1.00[EUR][1000 genomes]
rs7904795	1.00[EUR][1000 genomes]
rs7910911	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv5676	chr10:6381200-6428950	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6356000-6388200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:6357200-6397400	Weak transcription	Pancreas	Pancrea
3	chr10:6371400-6385200	Weak transcription	Spleen	Spleen
4	chr10:6371600-6389800	Weak transcription	Aorta	Aorta
5	chr10:6371800-6389400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:6372000-6387800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:6373800-6384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:6374000-6386400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:6376400-6387400	Weak transcription	Dnd41	blood
10	chr10:6376800-6389400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:6377800-6389200	Weak transcription	Brain Substantia Nigra	brain
12	chr10:6378000-6384000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:6379800-6388400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:6381400-6385000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:6382800-6389600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:6383000-6386600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:6383600-6384200	Bivalent Enhancer	Fetal Brain Male	brain
18	chr10:6383600-6384400	Enhancers	Fetal Kidney	kidney
19	chr10:6383600-6385800	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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