Variant report

Variant	rs7897452
Chromosome Location	chr10:18414466-18414467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10764318	0.85[ASN][1000 genomes]
rs10828259	0.85[ASN][1000 genomes]
rs10828260	0.85[ASN][1000 genomes]
rs11012759	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012760	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11012761	0.85[ASN][1000 genomes]
rs11012762	0.81[ASN][1000 genomes]
rs11012763	0.85[ASN][1000 genomes]
rs12761409	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34849615	0.88[ASN][1000 genomes]
rs7897163	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv519638	chr10:18408949-18414466	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7897452	PTPLA	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18413200-18423400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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