Variant report

Variant	rs10828259
Chromosome Location	chr10:18415779-18415780
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10508557	0.87[EUR][1000 genomes]
rs10764318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828260	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012759	0.85[ASN][1000 genomes]
rs11012760	0.88[ASN][1000 genomes]
rs11012761	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012762	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11012763	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592688	0.84[EUR][1000 genomes]
rs11597102	0.86[EUR][1000 genomes]
rs12761409	0.85[ASN][1000 genomes]
rs12767511	0.84[EUR][1000 genomes]
rs12779075	0.80[EUR][1000 genomes]
rs16916844	0.81[EUR][1000 genomes]
rs34849615	0.96[ASN][1000 genomes]
rs71497233	0.84[EUR][1000 genomes]
rs7897163	0.88[ASN][1000 genomes]
rs7897452	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18413200-18423400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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