Variant report

Variant	rs7898685
Chromosome Location	chr10:22299503-22299504
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10740997	1.00[CHB][hapmap]
rs1086899	1.00[CHB][hapmap]
rs2457954	1.00[CHB][hapmap]
rs2487512	1.00[CHB][hapmap]
rs2666750	1.00[CHB][hapmap]
rs2666756	1.00[CHB][hapmap]
rs2666759	1.00[CHB][hapmap]
rs2666760	1.00[CHB][hapmap]
rs2666781	1.00[CHB][hapmap]
rs2807978	1.00[CHB][hapmap]
rs2807983	1.00[CHB][hapmap]
rs2986336	0.82[JPT][hapmap]
rs6650129	1.00[CHB][hapmap]
rs6650130	1.00[CHB][hapmap]
rs7069830	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7898685	MLLT10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22293400-22304000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:22293600-22299600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:22294600-22303600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:22299000-22300000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:22299000-22300000	Enhancers	Fetal Stomach	stomach
6	chr10:22299200-22299600	Enhancers	Brain Cingulate Gyrus	brain
7	chr10:22299200-22300400	Enhancers	Brain Hippocampus Middle	brain
8	chr10:22299400-22299800	Flanking Active TSS	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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