Variant report
| Variant | rs7903660 |
|---|---|
| Chromosome Location | chr10:93423366-93423367 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:93422934..93425044-chr10:93558921..93560973,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10732773 | 0.91[ASN][1000 genomes] |
| rs10786008 | 0.87[ASN][1000 genomes] |
| rs10881935 | 0.81[ASN][1000 genomes] |
| rs10881939 | 0.87[ASN][1000 genomes] |
| rs10881940 | 0.87[ASN][1000 genomes] |
| rs10881941 | 0.87[ASN][1000 genomes] |
| rs10881942 | 0.87[ASN][1000 genomes] |
| rs10881943 | 0.87[ASN][1000 genomes] |
| rs10881945 | 0.91[ASN][1000 genomes] |
| rs1891271 | 0.91[ASN][1000 genomes] |
| rs1891272 | 0.91[ASN][1000 genomes] |
| rs2000177 | 0.87[ASN][1000 genomes] |
| rs2000178 | 0.87[ASN][1000 genomes] |
| rs2027486 | 0.87[ASN][1000 genomes] |
| rs2421621 | 0.83[ASN][1000 genomes] |
| rs2421623 | 0.87[ASN][1000 genomes] |
| rs2421624 | 0.91[ASN][1000 genomes] |
| rs2421625 | 0.91[ASN][1000 genomes] |
| rs2421626 | 0.91[ASN][1000 genomes] |
| rs2421627 | 0.91[ASN][1000 genomes] |
| rs2421628 | 0.91[ASN][1000 genomes] |
| rs2421629 | 0.91[ASN][1000 genomes] |
| rs4439432 | 0.85[ASN][1000 genomes] |
| rs4933216 | 0.91[ASN][1000 genomes] |
| rs4933681 | 0.83[ASN][1000 genomes] |
| rs4933683 | 0.83[ASN][1000 genomes] |
| rs4933687 | 0.87[ASN][1000 genomes] |
| rs4933690 | 0.91[ASN][1000 genomes] |
| rs4933691 | 0.91[ASN][1000 genomes] |
| rs4933692 | 0.91[ASN][1000 genomes] |
| rs6583782 | 0.91[ASN][1000 genomes] |
| rs7071844 | 0.83[ASN][1000 genomes] |
| rs7087959 | 0.91[ASN][1000 genomes] |
| rs7088831 | 0.87[ASN][1000 genomes] |
| rs7897524 | 0.87[ASN][1000 genomes] |
| rs7900863 | 0.91[ASN][1000 genomes] |
| rs7908980 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948135 | chr10:93423027-93430220 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7903660 | TNKS2-AS1 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs7903660 | TNKS2-AS1 | cis | Adipose Subcutaneous | GTEx |
| rs7903660 | TNKS2-AS1 | cis | Heart Left Ventricle | GTEx |
| rs7903660 | PPP1R3C | cis | Esophagus Mucosa | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:93419200-93431400 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr10:93420400-93424200 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
