Variant report

Variant	rs7088831
Chromosome Location	chr10:93412452-93412453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93407788..93410701-chr10:93411567..93414126,2	K562	blood:
2	chr10:93411332..93412973-chr10:93428669..93431138,2	MCF-7	breast:
3	chr10:93411652..93413648-chr10:93444195..93446402,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10399976	1.00[JPT][hapmap]
rs10732773	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10748563	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10786008	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881929	0.94[EUR][1000 genomes]
rs10881934	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881935	0.95[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881938	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10881939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881940	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881942	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881945	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186581	1.00[JPT][hapmap]
rs11186640	0.99[EUR][1000 genomes]
rs1539246	0.94[EUR][1000 genomes]
rs1891271	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1891272	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1891274	0.85[EUR][1000 genomes]
rs1970506	1.00[CEU][hapmap];0.85[YRI][hapmap];0.96[EUR][1000 genomes]
rs2000177	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421621	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421623	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421624	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421625	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421626	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421627	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421628	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421629	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4439432	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933216	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933677	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs4933681	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933682	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4933683	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933684	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4933685	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4933687	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933690	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933691	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933692	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57690075	0.81[AFR][1000 genomes]
rs6583782	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071844	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077656	0.91[EUR][1000 genomes]
rs7084386	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7087959	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7897524	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900799	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7900863	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903660	0.87[ASN][1000 genomes]
rs7908980	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7088831	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs7088831	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs7088831	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs7088831	PPP1R3C	cis	Esophagus Mucosa	GTEx
rs7088831	TNKS2-AS1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93410400-93414000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:93410800-93412600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:93410800-93412600	Enhancers	HMEC	breast
4	chr10:93410800-93412800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:93410800-93414000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:93411000-93413800	Enhancers	NHDF-Ad	bronchial
7	chr10:93411200-93414000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:93411200-93414000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:93411400-93412800	Enhancers	HSMMtube	muscle
10	chr10:93411400-93413600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:93411400-93413800	Enhancers	Hela-S3	cervix
12	chr10:93411400-93413800	Enhancers	HSMM	muscle
13	chr10:93411400-93413800	Enhancers	Osteobl	bone
14	chr10:93411400-93414000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:93411400-93414000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:93411600-93413200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:93411600-93413600	Flanking Active TSS	A549	lung
18	chr10:93411600-93413800	Enhancers	NH-A	brain
19	chr10:93411600-93413800	Enhancers	NHLF	lung
20	chr10:93411800-93412600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:93411800-93413200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:93411800-93413400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:93412000-93413800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:93412200-93412800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:93412200-93413800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:93412200-93413800	Enhancers	Fetal Heart	heart
27	chr10:93412400-93413000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:93412400-93414000	Flanking Active TSS	NHEK	skin

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