Variant report

Variant	rs10399976
Chromosome Location	chr10:93334078-93334079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93333836..93336172-chr10:93567023..93568938,2	MCF-7	breast:
2	chr10:93332183..93336360-chr10:93344097..93346879,3	K562	blood:

Variant related genes	Relation type
ENSG00000180581	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10400205	1.00[EUR][1000 genomes]
rs11186581	1.00[JPT][hapmap]
rs17106757	1.00[CHB][hapmap]
rs61178556	1.00[EUR][1000 genomes]
rs74149234	1.00[EUR][1000 genomes]
rs9783139	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93315200-93335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:93323200-93338000	Weak transcription	HSMMtube	muscle
3	chr10:93323400-93334600	Weak transcription	Pancreas	Pancrea
4	chr10:93324400-93341800	Weak transcription	Aorta	Aorta
5	chr10:93325800-93334800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93326200-93334200	Weak transcription	Left Ventricle	heart
7	chr10:93327800-93335600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:93327800-93347400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:93328400-93335400	Weak transcription	HMEC	breast
10	chr10:93330400-93335000	Weak transcription	K562	blood
11	chr10:93331800-93335600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:93332000-93334600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:93333400-93334200	Weak transcription	Brain Substantia Nigra	brain
14	chr10:93333400-93334800	Enhancers	Fetal Heart	heart
15	chr10:93333400-93336200	Enhancers	Fetal Lung	lung
16	chr10:93333400-93339800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:93333600-93335200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:93333800-93334600	Weak transcription	Psoas Muscle	Psoas
19	chr10:93333800-93336000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr10:93334000-93334400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:93334000-93335800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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