Variant report

Variant	rs17106757
Chromosome Location	chr10:93311918-93311919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:92639868..92640796-chr10:93311331..93312227,2	MCF-7	breast:
2	chr10:93311257..93312872-chr10:93394985..93396104,5	MCF-7	breast:
3	chr10:93309981..93319603-chr10:93387875..93394075,18	MCF-7	breast:
4	chr10:93057890..93058410-chr10:93311655..93312281,2	K562	blood:
5	chr10:93258411..93259432-chr10:93311351..93312312,3	MCF-7	breast:
6	chr10:93311805..93313050-chr10:93387452..93388202,3	MCF-7	breast:
7	chr10:93057770..93058312-chr10:93311725..93312552,2	MCF-7	breast:
8	chr10:93311259..93312202-chr10:93394865..93395816,4	K562	blood:
9	chr10:93311514..93312203-chr10:93392449..93393186,2	MCF-7	breast:
10	chr10:93310787..93313296-chr10:93313678..93315496,2	K562	blood:
11	chr10:93311332..93312699-chr10:93453654..93454623,6	MCF-7	breast:
12	chr10:93253136..93254014-chr10:93311415..93312189,3	MCF-7	breast:
13	chr10:93311883..93312872-chr10:93393286..93394075,2	MCF-7	breast:
14	chr10:93311362..93313128-chr10:93394763..93396863,21	MCF-7	breast:
15	chr10:93311487..93312272-chr10:93504776..93505607,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction
ENSG00000222305	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10399976	1.00[CHB][hapmap]
rs1854539	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93301000-93314800	Weak transcription	Aorta	Aorta
3	chr10:93302600-93312000	Weak transcription	NHLF	lung
4	chr10:93306400-93312200	Weak transcription	Pancreas	Pancrea
5	chr10:93308600-93312200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:93311400-93312200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:93311400-93312200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:93311400-93312200	Enhancers	Left Ventricle	heart
9	chr10:93311400-93312400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:93311400-93312600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:93311400-93312800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:93311400-93312800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:93311400-93312800	Enhancers	Ovary	ovary
14	chr10:93311400-93313000	Enhancers	Hela-S3	cervix
15	chr10:93311400-93313400	Enhancers	Fetal Stomach	stomach
16	chr10:93311400-93313600	Enhancers	Stomach Mucosa	stomach
17	chr10:93311400-93314400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:93311600-93312000	Enhancers	K562	blood
19	chr10:93311600-93312200	Enhancers	A549	lung
20	chr10:93311600-93312400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:93311600-93312600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:93311600-93312800	Flanking Active TSS	Fetal Lung	lung
23	chr10:93311600-93312800	Enhancers	Fetal Muscle Trunk	muscle
24	chr10:93311600-93313000	Enhancers	Fetal Muscle Leg	muscle
25	chr10:93311600-93316400	Enhancers	HepG2	liver
26	chr10:93311600-93321000	Enhancers	Fetal Intestine Small	intestine
27	chr10:93311800-93312000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr10:93311800-93312000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:93311800-93312000	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr10:93311800-93312200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:93311800-93312200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:93311800-93312200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:93311800-93312200	Active TSS	Brain Substantia Nigra	brain
34	chr10:93311800-93312200	Active TSS	Colonic Mucosa	Colon
35	chr10:93311800-93312200	Flanking Active TSS	Fetal Heart	heart
36	chr10:93311800-93312200	Active TSS	Fetal Kidney	kidney
37	chr10:93311800-93312200	Flanking Active TSS	Osteobl	bone
38	chr10:93311800-93312400	Enhancers	Right Atrium	heart
39	chr10:93311800-93312600	Flanking Active TSS	Liver	Liver
40	chr10:93311800-93312600	Active TSS	Brain Anterior Caudate	brain
41	chr10:93311800-93312600	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr10:93311800-93312600	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr10:93311800-93312600	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr10:93311800-93313000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr10:93311800-93313000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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