Variant report

Variant	rs9783139
Chromosome Location	chr10:93331123-93331124
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10399976	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10400205	1.00[EUR][1000 genomes]
rs61178556	1.00[EUR][1000 genomes]
rs74149234	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93315200-93335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:93323200-93338000	Weak transcription	HSMMtube	muscle
3	chr10:93323400-93334600	Weak transcription	Pancreas	Pancrea
4	chr10:93324400-93341800	Weak transcription	Aorta	Aorta
5	chr10:93325800-93334800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93326200-93334200	Weak transcription	Left Ventricle	heart
7	chr10:93327800-93335600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:93327800-93347400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:93328400-93335400	Weak transcription	HMEC	breast
10	chr10:93328600-93332200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:93328600-93332600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:93329600-93331400	Weak transcription	HSMM	muscle
13	chr10:93330400-93335000	Weak transcription	K562	blood
14	chr10:93330600-93333400	Weak transcription	Fetal Heart	heart
15	chr10:93331000-93331800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:93331000-93331800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:93331000-93332000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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