Variant report

Variant	rs4933677
Chromosome Location	chr10:93369096-93369097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
2	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
3	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
4	chr10:93368169..93371090-chr10:93379078..93381168,3	K562	blood:
5	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
6	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
7	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
8	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:
9	chr10:93368169..93371090-chr10:93379550..93381168,2	K562	blood:
10	chr10:93368025..93369544-chr10:93384747..93386329,2	K562	blood:
11	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10509629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10509631	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10732773	0.87[EUR][1000 genomes]
rs10748563	0.83[EUR][1000 genomes]
rs10748568	0.87[GIH][hapmap]
rs10786008	0.91[EUR][1000 genomes]
rs10786018	0.87[GIH][hapmap]
rs10881929	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10881934	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10881935	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs10881938	0.84[EUR][1000 genomes]
rs10881939	0.91[EUR][1000 genomes]
rs10881940	0.90[EUR][1000 genomes]
rs10881941	0.85[EUR][1000 genomes]
rs10881942	0.89[EUR][1000 genomes]
rs10881943	0.90[EUR][1000 genomes]
rs10881945	0.87[EUR][1000 genomes]
rs11186624	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11186625	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11186626	0.95[ASN][1000 genomes]
rs11186640	0.90[EUR][1000 genomes]
rs12359028	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1539246	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1891271	0.87[EUR][1000 genomes]
rs1891272	0.87[EUR][1000 genomes]
rs1970506	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs2000177	0.91[EUR][1000 genomes]
rs2000178	0.91[EUR][1000 genomes]
rs2027486	0.91[EUR][1000 genomes]
rs2066276	0.87[GIH][hapmap]
rs2421621	0.91[EUR][1000 genomes]
rs2421623	0.91[EUR][1000 genomes]
rs2421624	0.87[EUR][1000 genomes]
rs2421625	0.87[EUR][1000 genomes]
rs2421626	0.87[EUR][1000 genomes]
rs2421627	0.87[EUR][1000 genomes]
rs2421628	0.87[EUR][1000 genomes]
rs2421629	0.87[EUR][1000 genomes]
rs4439432	0.88[EUR][1000 genomes]
rs4933216	0.87[EUR][1000 genomes]
rs4933681	0.91[EUR][1000 genomes]
rs4933682	0.87[EUR][1000 genomes]
rs4933683	0.91[EUR][1000 genomes]
rs4933684	0.87[EUR][1000 genomes]
rs4933685	0.84[EUR][1000 genomes]
rs4933687	0.91[EUR][1000 genomes]
rs4933690	0.87[EUR][1000 genomes]
rs4933691	0.87[EUR][1000 genomes]
rs4933692	0.87[EUR][1000 genomes]
rs6583782	0.87[EUR][1000 genomes]
rs7071844	0.91[EUR][1000 genomes]
rs7077656	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084386	0.86[EUR][1000 genomes]
rs7087959	0.87[EUR][1000 genomes]
rs7088831	0.91[EUR][1000 genomes]
rs7897524	0.91[EUR][1000 genomes]
rs7900799	0.85[EUR][1000 genomes]
rs7900863	0.87[EUR][1000 genomes]
rs7908980	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4933677	CYP2C9	cis	cerebellum	SCAN
rs4933677	BTAF1	cis	cerebellum	SCAN
rs4933677	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs4933677	TNKS2-AS1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93367200-93369800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach
4	chr10:93367400-93369200	Enhancers	Brain Substantia Nigra	brain
5	chr10:93367400-93369200	Enhancers	Pancreas	Pancrea
6	chr10:93367400-93369200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:93367400-93369400	Enhancers	Fetal Intestine Small	intestine
8	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr10:93367400-93369400	Flanking Active TSS	Hela-S3	cervix
11	chr10:93367400-93369800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:93367400-93369800	Enhancers	Ovary	ovary
13	chr10:93367400-93371400	Enhancers	Psoas Muscle	Psoas
14	chr10:93367400-93371600	Enhancers	Fetal Muscle Leg	muscle
15	chr10:93367400-93372000	Enhancers	NHLF	lung
16	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
17	chr10:93367600-93369200	Enhancers	Colonic Mucosa	Colon
18	chr10:93367600-93369400	Enhancers	Brain Anterior Caudate	brain
19	chr10:93367600-93369400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr10:93367600-93369400	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr10:93367600-93369600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:93367600-93371000	Enhancers	NH-A	brain
23	chr10:93367800-93369400	Enhancers	Stomach Mucosa	stomach
24	chr10:93367800-93369400	Flanking Active TSS	K562	blood
25	chr10:93367800-93369600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:93367800-93369600	Enhancers	Fetal Brain Male	brain
27	chr10:93368000-93369200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:93368000-93369400	Flanking Active TSS	HSMMtube	muscle
29	chr10:93368000-93369800	Flanking Active TSS	Fetal Heart	heart
30	chr10:93368000-93371000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
32	chr10:93368200-93369200	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr10:93368400-93369200	Flanking Active TSS	Colon Smooth Muscle	Colon
34	chr10:93368400-93369400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:93368400-93369400	Flanking Active TSS	Fetal Lung	lung
36	chr10:93368600-93370200	Weak transcription	Right Ventricle	heart
37	chr10:93368800-93369200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:93368800-93369200	Enhancers	Brain Germinal Matrix	brain
39	chr10:93368800-93369200	Active TSS	Fetal Kidney	kidney
40	chr10:93368800-93369400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr10:93368800-93369600	Enhancers	HSMM	muscle
42	chr10:93368800-93369600	Enhancers	NHEK	skin
43	chr10:93368800-93370200	Weak transcription	Aorta	Aorta
44	chr10:93368800-93370200	Weak transcription	Right Atrium	heart
45	chr10:93368800-93370400	Weak transcription	HMEC	breast
46	chr10:93368800-93370800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:93368800-93370800	Weak transcription	Placenta	Placenta
48	chr10:93368800-93370800	Weak transcription	Left Ventricle	heart
49	chr10:93368800-93371000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:93368800-93371000	Weak transcription	Lung	lung

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