Variant report

Variant	rs10509629
Chromosome Location	chr10:93356372-93356373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93353150..93355778-chr10:93356212..93359175,2	K562	blood:
2	chr10:93355565..93358601-chr10:93391118..93395265,4	MCF-7	breast:
3	chr10:93354410..93356378-chr10:93360758..93362837,2	K562	blood:
4	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:
5	chr10:93168205..93170894-chr10:93355130..93357801,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509631	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186623	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11186624	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186625	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186626	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12359028	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933677	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7077656	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
3	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
4	chr10:93351000-93356400	Weak transcription	HMEC	breast
5	chr10:93351200-93356400	Weak transcription	Brain Substantia Nigra	brain
6	chr10:93351400-93357200	Weak transcription	Lung	lung
7	chr10:93351600-93356400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:93351600-93356400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:93351600-93356600	Weak transcription	Adipose Nuclei	Adipose
10	chr10:93351600-93356600	Weak transcription	Gastric	stomach
11	chr10:93351600-93356600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:93351800-93356600	Enhancers	A549	lung
13	chr10:93351800-93356800	Weak transcription	Fetal Brain Female	brain
14	chr10:93351800-93357200	Enhancers	Hela-S3	cervix
15	chr10:93351800-93359200	Enhancers	Fetal Intestine Large	intestine
16	chr10:93352400-93356400	Weak transcription	Brain Anterior Caudate	brain
17	chr10:93352400-93356800	Weak transcription	Fetal Brain Male	brain
18	chr10:93352400-93357200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:93353000-93356800	Weak transcription	Stomach Mucosa	stomach
20	chr10:93353000-93360200	Enhancers	Fetal Heart	heart
21	chr10:93353200-93357200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:93353400-93356600	Weak transcription	Left Ventricle	heart
23	chr10:93353400-93356600	Weak transcription	Right Atrium	heart
24	chr10:93353400-93357200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:93353600-93356400	Weak transcription	Small Intestine	intestine
26	chr10:93353600-93356600	Weak transcription	Right Ventricle	heart
27	chr10:93353600-93357200	Weak transcription	Placenta	Placenta
28	chr10:93353600-93357400	Weak transcription	Aorta	Aorta
29	chr10:93353800-93356400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:93354400-93356600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:93354400-93356800	Weak transcription	Pancreas	Pancrea
32	chr10:93354600-93356600	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:93354600-93356600	Weak transcription	Ovary	ovary
34	chr10:93354600-93356800	Weak transcription	Psoas Muscle	Psoas
35	chr10:93354600-93357000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:93354600-93357200	Weak transcription	Esophagus	oesophagus
37	chr10:93354600-93364800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr10:93355600-93356400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:93355600-93356800	Enhancers	Fetal Lung	lung
40	chr10:93355600-93358600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr10:93355600-93358600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:93355600-93359400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr10:93355800-93356600	Enhancers	HUVEC	blood vessel
44	chr10:93355800-93357200	Enhancers	Rectal Smooth Muscle	rectum
45	chr10:93355800-93358600	Enhancers	Fetal Kidney	kidney
46	chr10:93355800-93358800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:93355800-93358800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:93355800-93358800	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr10:93355800-93359200	Enhancers	NHEK	skin
50	chr10:93355800-93359400	Enhancers	NHDF-Ad	bronchial

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