Variant report

Variant	rs11186623
Chromosome Location	chr10:93362686-93362687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93357183..93358744-chr10:93360434..93363194,2	MCF-7	breast:
2	chr10:93362637..93365388-chr10:93371389..93374177,2	MCF-7	breast:
3	chr10:93347598..93350963-chr10:93361481..93364970,4	K562	blood:
4	chr10:93348521..93350817-chr10:93361481..93363972,2	K562	blood:
5	chr10:93362065..93364214-chr10:93385412..93387121,2	MCF-7	breast:
6	chr10:93354410..93356378-chr10:93360758..93362837,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10509629	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10509631	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10881934	1.00[JPT][hapmap]
rs11186624	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11186625	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11186626	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12359028	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11186623	TNKS2-AS1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93354600-93364800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:93357600-93363400	Weak transcription	Lung	lung
3	chr10:93357600-93368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:93357800-93367600	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:93358200-93363200	Weak transcription	Ovary	ovary
6	chr10:93358400-93363400	Weak transcription	Esophagus	oesophagus
7	chr10:93358400-93363400	Weak transcription	Right Atrium	heart
8	chr10:93358400-93363800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:93358400-93366400	Enhancers	Hela-S3	cervix
10	chr10:93358400-93367600	Weak transcription	Brain Anterior Caudate	brain
11	chr10:93358600-93362800	Weak transcription	Fetal Kidney	kidney
12	chr10:93358600-93364000	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:93358800-93362800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:93358800-93363000	Weak transcription	Aorta	Aorta
15	chr10:93358800-93363200	Weak transcription	HUVEC	blood vessel
16	chr10:93358800-93363200	Weak transcription	NHLF	lung
17	chr10:93358800-93363400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:93358800-93363400	Weak transcription	Osteobl	bone
19	chr10:93358800-93363600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:93358800-93363600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:93359000-93363200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:93359200-93363000	Weak transcription	NHEK	skin
23	chr10:93359400-93363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:93359400-93363800	Weak transcription	HMEC	breast
25	chr10:93360400-93363400	Weak transcription	Pancreas	Pancrea
26	chr10:93361000-93363600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:93361000-93363800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:93361000-93367400	Weak transcription	Psoas Muscle	Psoas
29	chr10:93361200-93366400	Enhancers	Fetal Heart	heart
30	chr10:93361800-93363000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:93361800-93363600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:93361800-93364800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:93361800-93365600	Enhancers	HSMM	muscle
34	chr10:93362000-93365400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr10:93362000-93365400	Enhancers	HSMMtube	muscle
36	chr10:93362200-93363600	Enhancers	A549	lung
37	chr10:93362200-93364000	Enhancers	HepG2	liver
38	chr10:93362200-93364200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:93362200-93365400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:93362200-93365400	Enhancers	Fetal Lung	lung
41	chr10:93362400-93362800	Enhancers	Right Ventricle	heart
42	chr10:93362400-93362800	Enhancers	Stomach Smooth Muscle	stomach
43	chr10:93362400-93363800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:93362400-93364800	Enhancers	Left Ventricle	heart
45	chr10:93362400-93365600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr10:93362400-93365600	Enhancers	Fetal Stomach	stomach
47	chr10:93362600-93363400	Enhancers	Stomach Mucosa	stomach
48	chr10:93362600-93363600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:93362600-93363600	Weak transcription	NHDF-Ad	bronchial
50	chr10:93362600-93363800	Weak transcription	Rectal Smooth Muscle	rectum

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