Variant report

Variant	rs11186626
Chromosome Location	chr10:93368789-93368790
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
2	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
3	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
4	chr10:93368169..93371090-chr10:93379078..93381168,3	K562	blood:
5	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
6	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
7	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
8	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:
9	chr10:93368169..93371090-chr10:93379550..93381168,2	K562	blood:
10	chr10:93368025..93369544-chr10:93384747..93386329,2	K562	blood:
11	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10509629	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10509631	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186623	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11186624	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186625	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12359028	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539246	0.81[AMR][1000 genomes]
rs4933677	0.95[ASN][1000 genomes]
rs7077656	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11186626	TNKS2-AS1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93367200-93369800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach
4	chr10:93367400-93368800	Enhancers	Aorta	Aorta
5	chr10:93367400-93368800	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr10:93367400-93368800	Enhancers	Placenta	Placenta
7	chr10:93367400-93368800	Enhancers	Left Ventricle	heart
8	chr10:93367400-93368800	Enhancers	Small Intestine	intestine
9	chr10:93367400-93369200	Enhancers	Brain Substantia Nigra	brain
10	chr10:93367400-93369200	Enhancers	Pancreas	Pancrea
11	chr10:93367400-93369200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr10:93367400-93369400	Enhancers	Fetal Intestine Small	intestine
13	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr10:93367400-93369400	Flanking Active TSS	Hela-S3	cervix
16	chr10:93367400-93369800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:93367400-93369800	Enhancers	Ovary	ovary
18	chr10:93367400-93371400	Enhancers	Psoas Muscle	Psoas
19	chr10:93367400-93371600	Enhancers	Fetal Muscle Leg	muscle
20	chr10:93367400-93372000	Enhancers	NHLF	lung
21	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
22	chr10:93367600-93368800	Enhancers	Fetal Muscle Trunk	muscle
23	chr10:93367600-93369000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:93367600-93369000	Enhancers	HUVEC	blood vessel
25	chr10:93367600-93369200	Enhancers	Colonic Mucosa	Colon
26	chr10:93367600-93369400	Enhancers	Brain Anterior Caudate	brain
27	chr10:93367600-93369400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr10:93367600-93369400	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr10:93367600-93369600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:93367600-93371000	Enhancers	NH-A	brain
31	chr10:93367800-93369000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:93367800-93369000	Flanking Active TSS	HepG2	liver
33	chr10:93367800-93369400	Enhancers	Stomach Mucosa	stomach
34	chr10:93367800-93369400	Flanking Active TSS	K562	blood
35	chr10:93367800-93369600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:93367800-93369600	Enhancers	Fetal Brain Male	brain
37	chr10:93368000-93368800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:93368000-93368800	Enhancers	Fetal Intestine Large	intestine
39	chr10:93368000-93369000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:93368000-93369200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:93368000-93369400	Flanking Active TSS	HSMMtube	muscle
42	chr10:93368000-93369800	Flanking Active TSS	Fetal Heart	heart
43	chr10:93368000-93371000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
45	chr10:93368200-93368800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:93368200-93368800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr10:93368200-93368800	Enhancers	Brain Hippocampus Middle	brain
48	chr10:93368200-93368800	Enhancers	Duodenum Mucosa	Duodenum
49	chr10:93368200-93368800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr10:93368200-93368800	Flanking Active TSS	Osteobl	bone

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