Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117943401..117945987-chr10:117947289..117949897,2	MCF-7	breast:
2	chr10:117900022..117903486-chr10:117940842..117944873,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10510016	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10749191	0.84[CHD][hapmap]
rs10749194	0.84[CHD][hapmap]
rs10749196	0.82[CHD][hapmap]
rs10787633	0.93[YRI][hapmap]
rs10787634	0.84[AFR][1000 genomes]
rs10885870	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11197570	0.85[AFR][1000 genomes]
rs11197572	0.83[ASW][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12762746	0.84[AFR][1000 genomes]
rs2420244	0.82[CHD][hapmap]
rs2420246	0.85[AFR][1000 genomes]
rs3781536	0.84[CHD][hapmap]
rs3781537	0.84[CHD][hapmap]
rs3781538	0.84[CHD][hapmap]
rs3781543	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs4553287	0.84[CHD][hapmap]
rs4751955	0.82[CHD][hapmap]
rs7903297	0.82[YRI][hapmap]
rs7914706	0.85[AFR][1000 genomes]
rs7915221	0.84[CHD][hapmap];0.84[GIH][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3334901	chr10:117944126-117944276	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7909875	GFRA1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117935200-117946400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:117943000-117944200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117943000-117944600	Strong transcription	Fetal Stomach	stomach
4	chr10:117943200-117944600	Enhancers	Fetal Muscle Leg	muscle
5	chr10:117943400-117944200	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:117943600-117955000	Weak transcription	Pancreas	Pancrea

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