Variant report

Variant	rs7903297
Chromosome Location	chr10:117945652-117945653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117944649..117947100-chr10:117962170..117964297,2	MCF-7	breast:
2	chr10:117943401..117945987-chr10:117947289..117949897,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10510016	0.82[CEU][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10749190	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs10749191	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10749195	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs10749196	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs10749197	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs10787632	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs10787633	0.87[CEU][hapmap];0.81[YRI][hapmap]
rs10787634	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10787635	0.91[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10885870	0.92[CEU][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11197563	0.84[EUR][1000 genomes]
rs11197570	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11197572	0.91[CEU][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11595700	0.88[EUR][1000 genomes]
rs12762746	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2251648	0.84[EUR][1000 genomes]
rs2270181	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2420244	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2420245	0.87[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2420246	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2577374	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2577376	0.82[EUR][1000 genomes]
rs3781536	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs3781537	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs3781538	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs3781543	0.92[CEU][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3781544	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs3781548	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4495806	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4553287	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4751579	0.83[EUR][1000 genomes]
rs4751581	0.92[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7078730	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7080193	0.85[EUR][1000 genomes]
rs7080212	0.84[EUR][1000 genomes]
rs7087059	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs7096448	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs7904057	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7909875	0.82[YRI][hapmap]
rs7914706	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7915221	0.91[CEU][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117935200-117946400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:117943600-117955000	Weak transcription	Pancreas	Pancrea
3	chr10:117944200-117947400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:117944200-117954800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:117945000-117946800	Enhancers	Liver	Liver
6	chr10:117945200-117954200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:117945400-117947000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:117945600-117945800	Enhancers	Fetal Stomach	stomach
9	chr10:117945600-117946600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links