Variant report

Variant	rs4751581
Chromosome Location	chr10:117949032-117949033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117943401..117945987-chr10:117947289..117949897,2	MCF-7	breast:
2	chr10:117948248..117951849-chr10:118029720..118032332,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10510016	0.81[EUR][1000 genomes]
rs10749190	0.82[EUR][1000 genomes]
rs10749195	0.82[EUR][1000 genomes]
rs10749196	0.82[EUR][1000 genomes]
rs10749197	0.82[EUR][1000 genomes]
rs10787632	0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10787634	0.81[EUR][1000 genomes]
rs10787635	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885870	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs11197563	0.81[EUR][1000 genomes]
rs11197570	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs11197572	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11595700	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2251648	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2270181	0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2420244	0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2420245	0.82[EUR][1000 genomes]
rs2420249	0.82[ASN][1000 genomes]
rs2577374	0.87[CEU][hapmap];0.87[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2577376	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781537	0.81[EUR][1000 genomes]
rs3781538	0.81[EUR][1000 genomes]
rs3781543	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs3781544	0.84[CEU][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3781548	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4495806	0.84[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4553287	0.81[EUR][1000 genomes]
rs4751579	0.82[EUR][1000 genomes]
rs7078730	0.81[EUR][1000 genomes]
rs7080193	0.82[EUR][1000 genomes]
rs7080212	0.81[EUR][1000 genomes]
rs7087059	0.82[EUR][1000 genomes]
rs7096448	0.81[EUR][1000 genomes]
rs7903297	0.92[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7904057	0.81[EUR][1000 genomes]
rs7914706	0.81[EUR][1000 genomes]
rs7915221	0.82[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117943600-117955000	Weak transcription	Pancreas	Pancrea
2	chr10:117944200-117954800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117945200-117954200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:117945800-117952000	Weak transcription	Fetal Stomach	stomach
5	chr10:117946600-117950200	Weak transcription	Adipose Nuclei	Adipose
6	chr10:117946800-117949800	Weak transcription	Liver	Liver

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