Variant report

Variant	rs10787635
Chromosome Location	chr10:117947281-117947282
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10510016	0.81[EUR][1000 genomes]
rs10749190	0.82[EUR][1000 genomes]
rs10749191	0.81[CHD][hapmap]
rs10749194	0.81[CHD][hapmap]
rs10749195	0.82[EUR][1000 genomes]
rs10749196	0.82[EUR][1000 genomes]
rs10749197	0.82[EUR][1000 genomes]
rs10787632	0.82[EUR][1000 genomes]
rs10787634	0.81[EUR][1000 genomes]
rs10885870	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11197563	0.81[EUR][1000 genomes]
rs11197570	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11197572	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11595700	0.85[EUR][1000 genomes]
rs2251648	0.87[EUR][1000 genomes]
rs2270181	0.81[EUR][1000 genomes]
rs2420244	0.82[EUR][1000 genomes]
rs2420245	0.82[EUR][1000 genomes]
rs2577374	0.87[CEU][hapmap];0.82[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs2577376	0.85[EUR][1000 genomes]
rs3781536	0.81[CHD][hapmap]
rs3781537	0.81[CHD][hapmap];0.81[EUR][1000 genomes]
rs3781538	0.81[CHD][hapmap];0.81[EUR][1000 genomes]
rs3781543	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs3781544	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs3781548	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4495806	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs4553287	0.81[CHD][hapmap];0.81[EUR][1000 genomes]
rs4751579	0.82[EUR][1000 genomes]
rs4751581	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7078730	0.81[EUR][1000 genomes]
rs7080193	0.82[EUR][1000 genomes]
rs7080212	0.81[EUR][1000 genomes]
rs7087059	0.82[EUR][1000 genomes]
rs7096448	0.81[EUR][1000 genomes]
rs7903297	0.91[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7904057	0.81[EUR][1000 genomes]
rs7914706	0.81[EUR][1000 genomes]
rs7915221	0.82[CEU][hapmap];0.81[CHD][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10787635	TECTB	cis	parietal	SCAN
rs10787635	GFRA1	cis	parietal	SCAN
rs10787635	RGS10	cis	parietal	SCAN
rs10787635	PNLIP	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117943600-117955000	Weak transcription	Pancreas	Pancrea
2	chr10:117944200-117947400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:117944200-117954800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:117945200-117954200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:117945800-117952000	Weak transcription	Fetal Stomach	stomach
6	chr10:117946200-117947800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:117946400-117948000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:117946600-117950200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:117946800-117949800	Weak transcription	Liver	Liver

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