Variant report

Variant	rs2251648
Chromosome Location	chr10:117954962-117954963
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10787635	0.87[EUR][1000 genomes]
rs2420249	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577374	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577376	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781548	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4751581	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7903297	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117943600-117955000	Weak transcription	Pancreas	Pancrea
2	chr10:117953400-117955000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:117953800-117955000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:117954200-117955200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:117954600-117955000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:117954600-117956800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:117954800-117955000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr10:117954800-117955000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr10:117954800-117955400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:117954800-117955400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:117954800-117955600	ZNF genes & repeats	Liver	Liver
12	chr10:117954800-117956000	ZNF genes & repeats	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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