Variant report

Variant	rs7911676
Chromosome Location	chr10:52970924-52970925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10996069	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7905063	0.81[ASN][1000 genomes]
rs7906944	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52950400-52975800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:52958800-52975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:52964600-52973600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:52964600-52974400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:52964800-52974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:52967400-52974200	Weak transcription	Psoas Muscle	Psoas
7	chr10:52969200-52974200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:52969200-52974200	Weak transcription	Aorta	Aorta
9	chr10:52969200-52974200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:52969800-52973400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:52969800-52974000	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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