Variant report

Variant	rs7916227
Chromosome Location	chr10:91330998-91330999
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10881603	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10881611	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10881612	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11185763	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11185777	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11185819	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11185820	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12773938	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1926214	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs45510095	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91324800-91332800	Weak transcription	Ovary	ovary
2	chr10:91325000-91333200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:91328000-91334000	Weak transcription	Fetal Lung	lung
4	chr10:91328000-91334200	Weak transcription	NHLF	lung
5	chr10:91328200-91347200	Weak transcription	HSMM	muscle
6	chr10:91330400-91334000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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